Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim8Q99PJ2 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Gm27405-201ENSMUST00000184201 112 ntBASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim8Q99PJ2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim8Q99PJ2 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim8Q99PJ2 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Gm10849-201ENSMUST00000100397 618 ntBASIC17.09■□□□□ 0.33
Trim8Q99PJ2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 AV356131-201ENSMUST00000206201 750 ntBASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim8Q99PJ2 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms