Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Msh4Q99MT2 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Msh4Q99MT2 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Msh4Q99MT2 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.01■□□□□ 0.31
Msh4Q99MT2 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Msh4Q99MT2 Gm37374-201ENSMUST00000194954 1829 ntBASIC17■□□□□ 0.31
Msh4Q99MT2 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Msh4Q99MT2 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17■□□□□ 0.31
Msh4Q99MT2 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Msh4Q99MT2 Gm44544-201ENSMUST00000207052 1844 ntBASIC17■□□□□ 0.31
Msh4Q99MT2 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Msh4Q99MT2 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Msh4Q99MT2 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.99■□□□□ 0.31
Msh4Q99MT2 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.99■□□□□ 0.31
Msh4Q99MT2 Gm10698-201ENSMUST00000182663 604 ntBASIC16.99■□□□□ 0.31
Msh4Q99MT2 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Msh4Q99MT2 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.99■□□□□ 0.31
Msh4Q99MT2 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.98■□□□□ 0.31
Msh4Q99MT2 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Msh4Q99MT2 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms