Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Rpa1Q8VEE4 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Rpa1Q8VEE4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.6■□□□□ 0.41
Rpa1Q8VEE4 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rpa1Q8VEE4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Rpa1Q8VEE4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.58■□□□□ 0.4
Rpa1Q8VEE4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Rpa1Q8VEE4 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms