Protein–RNA interactions for Protein: Q8R550

Sh3kbp1, SH3 domain-containing kinase-binding protein 1, mousemouse

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3kbp1Q8R550 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sh3kbp1Q8R550 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sh3kbp1Q8R550 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.02■□□□□ 0.47
Sh3kbp1Q8R550 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Gm21814-202ENSMUST00000203277 873 ntBASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sh3kbp1Q8R550 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Gm37374-201ENSMUST00000194954 1829 ntBASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Gm6433-201ENSMUST00000118634 875 ntBASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Arhgef4-208ENSMUST00000211073 171 ntBASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sh3kbp1Q8R550 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3kbp1Q8R550 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Sh3kbp1Q8R550 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Gm10231-201ENSMUST00000181584 441 ntBASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Gm10175-202ENSMUST00000208752 441 ntBASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3kbp1Q8R550 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms