Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Brf1Q8CFK2 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Brf1Q8CFK2 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Brf1Q8CFK2 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Brf1Q8CFK2 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Brf1Q8CFK2 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Gm9694-201ENSMUST00000193347 1189 ntBASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Brf1Q8CFK2 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Brf1Q8CFK2 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms