Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nup88Q8CEC0 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Gm11927-201ENSMUST00000118472 759 ntBASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Gm22325-201ENSMUST00000158904 308 ntBASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.6■□□□□ 0.89
Nup88Q8CEC0 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nup88Q8CEC0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.58■□□□□ 0.89
Nup88Q8CEC0 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.58■□□□□ 0.88
Nup88Q8CEC0 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.57■□□□□ 0.88
Nup88Q8CEC0 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nup88Q8CEC0 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Nup88Q8CEC0 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms