Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trub1Q8C0D0 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Trub1Q8C0D0 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Gm12382-201ENSMUST00000122005 922 ntBASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Gm43183-201ENSMUST00000200632 547 ntBASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trub1Q8C0D0 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trub1Q8C0D0 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trub1Q8C0D0 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trub1Q8C0D0 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trub1Q8C0D0 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.02■□□□□ 0.47
Trub1Q8C0D0 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Gm10698-201ENSMUST00000182663 604 ntBASIC18.01■□□□□ 0.47
Trub1Q8C0D0 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.01■□□□□ 0.47
Trub1Q8C0D0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18■□□□□ 0.47
Trub1Q8C0D0 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18■□□□□ 0.47
Trub1Q8C0D0 Gm20760-201ENSMUST00000179197 648 ntBASIC18■□□□□ 0.47
Trub1Q8C0D0 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trub1Q8C0D0 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trub1Q8C0D0 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Gm15378-201ENSMUST00000121894 207 ntBASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Trub1Q8C0D0 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms