Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.62■□□□□ 0.41
Six4Q61321 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Six4Q61321 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.62■□□□□ 0.41
Six4Q61321 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Six4Q61321 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Six4Q61321 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.61■□□□□ 0.41
Six4Q61321 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Six4Q61321 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.61■□□□□ 0.41
Six4Q61321 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Six4Q61321 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.6■□□□□ 0.41
Six4Q61321 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.6■□□□□ 0.41
Six4Q61321 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.6■□□□□ 0.41
Six4Q61321 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.6■□□□□ 0.41
Six4Q61321 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.6■□□□□ 0.41
Six4Q61321 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Six4Q61321 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Six4Q61321 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.59■□□□□ 0.41
Six4Q61321 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.59■□□□□ 0.41
Six4Q61321 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Six4Q61321 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Gm10252-201ENSMUST00000209541 832 ntBASIC17.59■□□□□ 0.41
Six4Q61321 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Six4Q61321 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Six4Q61321 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.58■□□□□ 0.41
Six4Q61321 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.58■□□□□ 0.41
Six4Q61321 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Six4Q61321 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Six4Q61321 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Six4Q61321 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.58■□□□□ 0.4
Six4Q61321 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Six4Q61321 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.58■□□□□ 0.4
Six4Q61321 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.58■□□□□ 0.4
Six4Q61321 Timm23-208ENSMUST00000226683 750 ntBASIC17.58■□□□□ 0.4
Six4Q61321 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.58■□□□□ 0.4
Six4Q61321 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Six4Q61321 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.58■□□□□ 0.4
Six4Q61321 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Six4Q61321 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms