Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ubr3Q5U430 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC21.28■■□□□ 1
Ubr3Q5U430 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ubr3Q5U430 Rps4l-201ENSMUST00000071745 943 ntBASIC21.28■■□□□ 1
Ubr3Q5U430 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ubr3Q5U430 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ubr3Q5U430 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubr3Q5U430 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubr3Q5U430 Gm11336-201ENSMUST00000118168 334 ntBASIC21.28■■□□□ 1
Ubr3Q5U430 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Gm43073-201ENSMUST00000198200 1189 ntBASIC21.28■■□□□ 1
Ubr3Q5U430 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.28■■□□□ 1
Ubr3Q5U430 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Ubr3Q5U430 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ubr3Q5U430 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44357-201ENSMUST00000195897 142 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm19658-201ENSMUST00000196231 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44367-201ENSMUST00000196836 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44350-201ENSMUST00000197197 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44390-201ENSMUST00000197533 144 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44313-201ENSMUST00000198018 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44486-201ENSMUST00000198508 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44454-201ENSMUST00000198541 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44314-201ENSMUST00000199263 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44394-201ENSMUST00000199558 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44484-201ENSMUST00000199873 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44466-201ENSMUST00000200264 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Gm44359-201ENSMUST00000200671 138 ntBASIC21.27■■□□□ 1
Ubr3Q5U430 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubr3Q5U430 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Ubr3Q5U430 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC21.26■□□□□ 0.99
Ubr3Q5U430 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC21.26■□□□□ 0.99
Ubr3Q5U430 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.25■□□□□ 0.99
Ubr3Q5U430 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Gm7935-201ENSMUST00000100555 1278 ntBASIC21.25■□□□□ 0.99
Ubr3Q5U430 Gm12644-201ENSMUST00000119935 606 ntBASIC21.25■□□□□ 0.99
Ubr3Q5U430 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubr3Q5U430 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Gm27000-201ENSMUST00000182943 842 ntBASIC21.24■□□□□ 0.99
Ubr3Q5U430 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Gm37935-201ENSMUST00000192012 982 ntBASIC21.24■□□□□ 0.99
Ubr3Q5U430 Gm9449-201ENSMUST00000207265 1011 ntBASIC21.24■□□□□ 0.99
Ubr3Q5U430 AC138767.1-201ENSMUST00000222661 415 ntBASIC21.24■□□□□ 0.99
Ubr3Q5U430 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC21.24■□□□□ 0.99
Ubr3Q5U430 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Ubr3Q5U430 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubr3Q5U430 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC21.22■□□□□ 0.99
Ubr3Q5U430 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Gm10052-201ENSMUST00000168019 960 ntBASIC21.22■□□□□ 0.99
Ubr3Q5U430 Vti1a-206ENSMUST00000225529 1244 ntBASIC21.22■□□□□ 0.99
Ubr3Q5U430 Gm7729-201ENSMUST00000050143 801 ntBASIC21.22■□□□□ 0.99
Ubr3Q5U430 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC21.22■□□□□ 0.99
Ubr3Q5U430 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubr3Q5U430 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms