Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm13436-201ENSMUST00000120418 567 ntBASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Vps54Q5SPW0 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Vps54Q5SPW0 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Vps54Q5SPW0 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.96■□□□□ 0.95
Vps54Q5SPW0 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Gm13559-201ENSMUST00000120476 863 ntBASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Gm7638-201ENSMUST00000121348 967 ntBASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Vps54Q5SPW0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Vps54Q5SPW0 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Vps54Q5SPW0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.92■□□□□ 0.94
Vps54Q5SPW0 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms