Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Gm17971-201ENSMUST00000190239 806 ntBASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Upf3aQ3ULJ3 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Upf3aQ3ULJ3 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Gm26039-201ENSMUST00000158152 144 ntBASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Gm10566-201ENSMUST00000086739 996 ntBASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3aQ3ULJ3 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Gm28033-201ENSMUST00000184224 96 ntBASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3aQ3ULJ3 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Gm17807-201ENSMUST00000186869 298 ntBASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3aQ3ULJ3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Upf3aQ3ULJ3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Upf3aQ3ULJ3 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms