Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm12527-201ENSMUST00000117967 564 ntBASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm22325-201ENSMUST00000158904 308 ntBASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col28a1Q2UY11 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col28a1Q2UY11 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.96■□□□□ 0.3
Col28a1Q2UY11 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Haglr-201ENSMUST00000100000 2085 ntBASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC16.95■□□□□ 0.3
Col28a1Q2UY11 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Gm13146-201ENSMUST00000118508 780 ntBASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Gm13148-201ENSMUST00000118892 745 ntBASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Gm10252-201ENSMUST00000209541 832 ntBASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col28a1Q2UY11 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms