Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Col8a1Q00780 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Col8a1Q00780 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC14.86□□□□□ -0.03
Col8a1Q00780 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a1Q00780 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gm4974-201ENSMUST00000209974 875 ntBASIC14.85□□□□□ -0.03
Col8a1Q00780 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.85□□□□□ -0.03
Col8a1Q00780 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a1Q00780 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Col8a1Q00780 Gm43182-201ENSMUST00000199476 2528 ntBASIC14.85□□□□□ -0.03
Col8a1Q00780 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Col8a1Q00780 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Gm7638-201ENSMUST00000121348 967 ntBASIC14.84□□□□□ -0.03
Col8a1Q00780 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.84□□□□□ -0.03
Col8a1Q00780 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Gm5864-201ENSMUST00000202263 970 ntBASIC14.84□□□□□ -0.03
Col8a1Q00780 Gm34391-201ENSMUST00000203706 907 ntBASIC14.84□□□□□ -0.03
Col8a1Q00780 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.84□□□□□ -0.03
Col8a1Q00780 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a1Q00780 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col8a1Q00780 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col8a1Q00780 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Col8a1Q00780 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col8a1Q00780 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col8a1Q00780 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col8a1Q00780 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms