Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.71■□□□□ 0.91
Ercc3P49135 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ercc3P49135 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
Ercc3P49135 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
Ercc3P49135 Gm12085-201ENSMUST00000119263 940 ntBASIC20.7■□□□□ 0.9
Ercc3P49135 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ercc3P49135 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Ercc3P49135 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ercc3P49135 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ercc3P49135 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ercc3P49135 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.69■□□□□ 0.9
Ercc3P49135 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.69■□□□□ 0.9
Ercc3P49135 Gm11643-201ENSMUST00000119578 864 ntBASIC20.69■□□□□ 0.9
Ercc3P49135 Mir5122-201ENSMUST00000175004 89 ntBASIC20.69■□□□□ 0.9
Ercc3P49135 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Ercc3P49135 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Ercc3P49135 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ercc3P49135 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ercc3P49135 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.68■□□□□ 0.9
Ercc3P49135 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ercc3P49135 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.68■□□□□ 0.9
Ercc3P49135 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Ercc3P49135 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ercc3P49135 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.67■□□□□ 0.9
Ercc3P49135 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.67■□□□□ 0.9
Ercc3P49135 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.67■□□□□ 0.9
Ercc3P49135 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.67■□□□□ 0.9
Ercc3P49135 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Ercc3P49135 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.67■□□□□ 0.9
Ercc3P49135 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.67■□□□□ 0.9
Ercc3P49135 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ercc3P49135 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ercc3P49135 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.66■□□□□ 0.9
Ercc3P49135 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.66■□□□□ 0.9
Ercc3P49135 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Ercc3P49135 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.66■□□□□ 0.9
Ercc3P49135 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ercc3P49135 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Ercc3P49135 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Ercc3P49135 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.65■□□□□ 0.9
Ercc3P49135 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC20.65■□□□□ 0.9
Ercc3P49135 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Gm37055-201ENSMUST00000191866 133 ntBASIC20.65■□□□□ 0.9
Ercc3P49135 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ercc3P49135 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms