Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Msh3P13705 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Msh3P13705 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Msh3P13705 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.21■□□□□ 0.67
Msh3P13705 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.21■□□□□ 0.67
Msh3P13705 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Msh3P13705 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh3P13705 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.21■□□□□ 0.67
Msh3P13705 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.2■□□□□ 0.66
Msh3P13705 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.2■□□□□ 0.66
Msh3P13705 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.2■□□□□ 0.66
Msh3P13705 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.2■□□□□ 0.66
Msh3P13705 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh3P13705 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh3P13705 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.19■□□□□ 0.66
Msh3P13705 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh3P13705 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh3P13705 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Msh3P13705 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Msh3P13705 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Msh3P13705 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Msh3P13705 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Mir1199-201ENSMUST00000117015 119 ntBASIC19.18■□□□□ 0.66
Msh3P13705 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.18■□□□□ 0.66
Msh3P13705 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Msh3P13705 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Msh3P13705 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Msh3P13705 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.18■□□□□ 0.66
Msh3P13705 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh3P13705 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Msh3P13705 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Msh3P13705 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.17■□□□□ 0.66
Msh3P13705 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.17■□□□□ 0.66
Msh3P13705 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Gm17661-201ENSMUST00000170317 270 ntBASIC19.17■□□□□ 0.66
Msh3P13705 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.17■□□□□ 0.66
Msh3P13705 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.17■□□□□ 0.66
Msh3P13705 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Msh3P13705 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msh3P13705 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.16■□□□□ 0.66
Msh3P13705 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.16■□□□□ 0.66
Msh3P13705 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msh3P13705 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Msh3P13705 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Msh3P13705 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Msh3P13705 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msh3P13705 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.15■□□□□ 0.66
Msh3P13705 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.15■□□□□ 0.66
Msh3P13705 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms