Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Msx1P13297 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Gm19891-201ENSMUST00000189771 303 ntBASIC16.57■□□□□ 0.24
Msx1P13297 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Msx1P13297 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Msx1P13297 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC16.57■□□□□ 0.24
Msx1P13297 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Msx1P13297 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Msx1P13297 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Msx1P13297 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC16.56■□□□□ 0.24
Msx1P13297 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Msx1P13297 Gm38285-201ENSMUST00000192928 922 ntBASIC16.56■□□□□ 0.24
Msx1P13297 Gm3375-201ENSMUST00000203929 796 ntBASIC16.56■□□□□ 0.24
Msx1P13297 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.56■□□□□ 0.24
Msx1P13297 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16.56■□□□□ 0.24
Msx1P13297 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Msx1P13297 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Msx1P13297 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Msx1P13297 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Msx1P13297 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC16.55■□□□□ 0.24
Msx1P13297 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.55■□□□□ 0.24
Msx1P13297 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.55■□□□□ 0.24
Msx1P13297 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Gm42545-201ENSMUST00000202755 922 ntBASIC16.55■□□□□ 0.24
Msx1P13297 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Msx1P13297 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Msx1P13297 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Msx1P13297 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Msx1P13297 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC16.54■□□□□ 0.24
Msx1P13297 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Msx1P13297 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.54■□□□□ 0.24
Msx1P13297 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.54■□□□□ 0.24
Msx1P13297 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Msx1P13297 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Msx1P13297 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.53■□□□□ 0.24
Msx1P13297 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.53■□□□□ 0.24
Msx1P13297 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.53■□□□□ 0.24
Msx1P13297 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Msx1P13297 Gm7712-202ENSMUST00000222331 1510 ntBASIC16.53■□□□□ 0.24
Msx1P13297 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Msx1P13297 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Msx1P13297 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Msx1P13297 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms