Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Sdc4O35988 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Sdc4O35988 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.03■□□□□ 0.48
Sdc4O35988 Fst-202ENSMUST00000223640 2612 ntBASIC18.02■□□□□ 0.48
Sdc4O35988 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Sdc4O35988 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Grk6-206ENSMUST00000224995 2971 ntBASIC18.02■□□□□ 0.48
Sdc4O35988 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sdc4O35988 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.02■□□□□ 0.47
Sdc4O35988 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Sdc4O35988 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.01■□□□□ 0.47
Sdc4O35988 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Sdc4O35988 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Sdc4O35988 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.01■□□□□ 0.47
Sdc4O35988 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.01■□□□□ 0.47
Sdc4O35988 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.01■□□□□ 0.47
Sdc4O35988 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.01■□□□□ 0.47
Sdc4O35988 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sdc4O35988 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Sdc4O35988 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Sdc4O35988 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18■□□□□ 0.47
Sdc4O35988 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Gm18959-201ENSMUST00000208954 655 ntBASIC18■□□□□ 0.47
Sdc4O35988 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18■□□□□ 0.47
Sdc4O35988 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Sdc4O35988 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Sdc4O35988 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sdc4O35988 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Sdc4O35988 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Sdc4O35988 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Sdc4O35988 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.99■□□□□ 0.47
Sdc4O35988 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Gm2274-201ENSMUST00000184539 609 ntBASIC17.99■□□□□ 0.47
Sdc4O35988 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sdc4O35988 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.99■□□□□ 0.47
Sdc4O35988 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Sdc4O35988 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
Sdc4O35988 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.98■□□□□ 0.47
Sdc4O35988 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Sdc4O35988 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.98■□□□□ 0.47
Sdc4O35988 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Sdc4O35988 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Sdc4O35988 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sdc4O35988 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sdc4O35988 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sdc4O35988 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms