Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ube4aE9Q735 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Gm14859-201ENSMUST00000117752 357 ntBASIC21.04■□□□□ 0.96
Ube4aE9Q735 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.04■□□□□ 0.96
Ube4aE9Q735 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ube4aE9Q735 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC21.03■□□□□ 0.96
Ube4aE9Q735 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ube4aE9Q735 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Gm11355-201ENSMUST00000121120 306 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Gm26039-201ENSMUST00000158152 144 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Gm3272-201ENSMUST00000181181 1229 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Ank2-226ENSMUST00000189368 339 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 Gm10566-201ENSMUST00000086739 996 ntBASIC21.02■□□□□ 0.96
Ube4aE9Q735 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ube4aE9Q735 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Ube4aE9Q735 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ube4aE9Q735 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ube4aE9Q735 Actl10-202ENSMUST00000226583 1501 ntBASIC21■□□□□ 0.95
Ube4aE9Q735 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Gm7284-201ENSMUST00000131667 944 ntBASIC21■□□□□ 0.95
Ube4aE9Q735 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Gm29518-201ENSMUST00000190858 372 ntBASIC21■□□□□ 0.95
Ube4aE9Q735 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ube4aE9Q735 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC21■□□□□ 0.95
Ube4aE9Q735 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ube4aE9Q735 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ube4aE9Q735 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ube4aE9Q735 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ube4aE9Q735 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms