Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Prpf40aQ9R1C7 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Prpf40aQ9R1C7 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Prpf40aQ9R1C7 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Prpf40aQ9R1C7 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Prpf40aQ9R1C7 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Prpf40aQ9R1C7 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Prpf40aQ9R1C7 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Prpf40aQ9R1C7 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Mir6349-201ENSMUST00000184059 97 ntBASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Gm8969-201ENSMUST00000199694 526 ntBASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Mtag2-201ENSMUST00000058665 714 ntBASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Prpf40aQ9R1C7 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Prpf40aQ9R1C7 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Prpf40aQ9R1C7 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Prpf40aQ9R1C7 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Gm15375-201ENSMUST00000119510 849 ntBASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Gm8520-201ENSMUST00000186517 868 ntBASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Prpf40aQ9R1C7 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Gm5643-201ENSMUST00000117081 966 ntBASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Prpf40aQ9R1C7 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms