Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Gm18669-201ENSMUST00000216049 778 ntBASIC15.29■□□□□ 0.04
Nubp1Q9R060 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Nubp1Q9R060 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.28■□□□□ 0.04
Nubp1Q9R060 4930412F09Rik-201ENSMUST00000139006 1017 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Gm27389-201ENSMUST00000183622 195 ntBASIC15.28■□□□□ 0.04
Nubp1Q9R060 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC15.28■□□□□ 0.04
Nubp1Q9R060 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC15.28■□□□□ 0.04
Nubp1Q9R060 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Nubp1Q9R060 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Nubp1Q9R060 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Gm28033-201ENSMUST00000184224 96 ntBASIC15.27■□□□□ 0.04
Nubp1Q9R060 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Gm7461-201ENSMUST00000058918 827 ntBASIC15.27■□□□□ 0.04
Nubp1Q9R060 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Nubp1Q9R060 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Nubp1Q9R060 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Nubp1Q9R060 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Nubp1Q9R060 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Gm12085-201ENSMUST00000119263 940 ntBASIC15.26■□□□□ 0.03
Nubp1Q9R060 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC15.26■□□□□ 0.03
Nubp1Q9R060 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Nubp1Q9R060 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Gm12106-201ENSMUST00000116006 1200 ntBASIC15.25■□□□□ 0.03
Nubp1Q9R060 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Umpk-ps-201ENSMUST00000211897 827 ntBASIC15.25■□□□□ 0.03
Nubp1Q9R060 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Nubp1Q9R060 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nubp1Q9R060 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nubp1Q9R060 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Nubp1Q9R060 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Nubp1Q9R060 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms