Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Mir2861-201ENSMUST00000175539 82 ntBASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Flg-201ENSMUST00000050758 1488 ntBASIC19.21■□□□□ 0.67
Copb1Q9JIF7 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Copb1Q9JIF7 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Gm10418-201ENSMUST00000100943 576 ntBASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.19■□□□□ 0.66
Copb1Q9JIF7 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.18■□□□□ 0.66
Copb1Q9JIF7 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Rab3c-203ENSMUST00000224180 967 ntBASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.17■□□□□ 0.66
Copb1Q9JIF7 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Copb1Q9JIF7 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Gm11927-201ENSMUST00000118472 759 ntBASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC19.16■□□□□ 0.66
Copb1Q9JIF7 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms