Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rpap3Q9D706 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Gm6659-201ENSMUST00000174752 547 ntBASIC19.32■□□□□ 0.68
Rpap3Q9D706 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rpap3Q9D706 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Rpap3Q9D706 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpap3Q9D706 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Gm10013-201ENSMUST00000106074 672 ntBASIC19.3■□□□□ 0.68
Rpap3Q9D706 Gm13474-201ENSMUST00000122466 815 ntBASIC19.3■□□□□ 0.68
Rpap3Q9D706 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Gm17661-201ENSMUST00000170317 270 ntBASIC19.3■□□□□ 0.68
Rpap3Q9D706 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.3■□□□□ 0.68
Rpap3Q9D706 AC134329.2-201ENSMUST00000217897 428 ntBASIC19.3■□□□□ 0.68
Rpap3Q9D706 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rpap3Q9D706 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.29■□□□□ 0.68
Rpap3Q9D706 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.29■□□□□ 0.68
Rpap3Q9D706 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Rpap3Q9D706 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpap3Q9D706 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.27■□□□□ 0.68
Rpap3Q9D706 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rpap3Q9D706 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.27■□□□□ 0.68
Rpap3Q9D706 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms