Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Brf1Q8CFK2 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Gm8969-201ENSMUST00000199694 526 ntBASIC21.15■□□□□ 0.98
Brf1Q8CFK2 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Brf1Q8CFK2 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Brf1Q8CFK2 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
Brf1Q8CFK2 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Brf1Q8CFK2 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Brf1Q8CFK2 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Brf1Q8CFK2 Gm10517-202ENSMUST00000192970 758 ntBASIC21.14■□□□□ 0.97
Brf1Q8CFK2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Brf1Q8CFK2 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Brf1Q8CFK2 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Brf1Q8CFK2 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Brf1Q8CFK2 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Gm10812-201ENSMUST00000099864 546 ntBASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Gm43272-201ENSMUST00000200599 1584 ntBASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Brf1Q8CFK2 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 AC125311.2-201ENSMUST00000227477 1940 ntBASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Mir1199-201ENSMUST00000117015 119 ntBASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Brf1Q8CFK2 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Brf1Q8CFK2 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Gm4974-201ENSMUST00000209974 875 ntBASIC21.1■□□□□ 0.97
Brf1Q8CFK2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Brf1Q8CFK2 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Brf1Q8CFK2 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms