Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Reep4-203ENSMUST00000226563 1444 ntBASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Gm9988-201ENSMUST00000069786 435 ntBASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28bQ8CEG5 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28bQ8CEG5 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Ccdc28bQ8CEG5 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28bQ8CEG5 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28bQ8CEG5 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Gm45417-201ENSMUST00000209533 758 ntBASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28bQ8CEG5 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Ccdc28bQ8CEG5 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Ccdc28bQ8CEG5 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.28■□□□□ 0.36
Ccdc28bQ8CEG5 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms