Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Gm13436-201ENSMUST00000120418 567 ntBASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Hmgb4Q6P8W9 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Hmgb4Q6P8W9 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Hmgb4Q6P8W9 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Hmgb4Q6P8W9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Gm13559-201ENSMUST00000120476 863 ntBASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Gm3375-201ENSMUST00000203929 796 ntBASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Odf3b-204ENSMUST00000227834 930 ntBASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Hmgb4Q6P8W9 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Gm7889-201ENSMUST00000185591 958 ntBASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Hmgb4Q6P8W9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Hmgb4Q6P8W9 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.29■□□□□ 0.52
Hmgb4Q6P8W9 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Hmgb4Q6P8W9 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms