Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smchd1Q6P5D8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Gm18958-201ENSMUST00000174258 762 ntBASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Gm9731-201ENSMUST00000209480 747 ntBASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smchd1Q6P5D8 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smchd1Q6P5D8 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smchd1Q6P5D8 Gm10013-201ENSMUST00000106074 672 ntBASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Spsb2-203ENSMUST00000112473 1322 ntBASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Gm2274-201ENSMUST00000184539 609 ntBASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.27■□□□□ 0.67
Smchd1Q6P5D8 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smchd1Q6P5D8 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Gm6345-202ENSMUST00000180900 204 ntBASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smchd1Q6P5D8 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smchd1Q6P5D8 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms