Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm15378-201ENSMUST00000121894 207 ntBASIC21.54■■□□□ 1.04
Trim27Q62158 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim27Q62158 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.54■■□□□ 1.04
Trim27Q62158 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim27Q62158 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim27Q62158 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Trim27Q62158 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Gm19439-201ENSMUST00000198195 2273 ntBASIC21.53■■□□□ 1.04
Trim27Q62158 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.53■■□□□ 1.04
Trim27Q62158 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Gm10517-202ENSMUST00000192970 758 ntBASIC21.53■■□□□ 1.04
Trim27Q62158 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trim27Q62158 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Gm43294-201ENSMUST00000202850 2490 ntBASIC21.52■■□□□ 1.04
Trim27Q62158 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
Trim27Q62158 Gm4974-201ENSMUST00000209974 875 ntBASIC21.52■■□□□ 1.04
Trim27Q62158 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
Trim27Q62158 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Trim27Q62158 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.52■■□□□ 1.04
Trim27Q62158 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trim27Q62158 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trim27Q62158 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
Trim27Q62158 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC21.51■■□□□ 1.03
Trim27Q62158 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC21.51■■□□□ 1.03
Trim27Q62158 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.51■■□□□ 1.03
Trim27Q62158 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.51■■□□□ 1.03
Trim27Q62158 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC21.51■■□□□ 1.03
Trim27Q62158 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.51■■□□□ 1.03
Trim27Q62158 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
Trim27Q62158 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trim27Q62158 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC21.5■■□□□ 1.03
Trim27Q62158 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Gm15635-204ENSMUST00000208024 2539 ntBASIC21.5■■□□□ 1.03
Trim27Q62158 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Trim27Q62158 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Trim27Q62158 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
Trim27Q62158 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Gm43338-201ENSMUST00000198617 2223 ntBASIC21.49■■□□□ 1.03
Trim27Q62158 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trim27Q62158 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Trim27Q62158 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Trim27Q62158 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim27Q62158 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim27Q62158 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim27Q62158 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC21.47■■□□□ 1.03
Trim27Q62158 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Trim27Q62158 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trim27Q62158 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms