Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Col11a1Q61245 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Col11a1Q61245 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Col11a1Q61245 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col11a1Q61245 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Col11a1Q61245 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col11a1Q61245 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col11a1Q61245 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.68■□□□□ 0.74
Col11a1Q61245 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.68■□□□□ 0.74
Col11a1Q61245 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Col11a1Q61245 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Col11a1Q61245 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col11a1Q61245 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.67■□□□□ 0.74
Col11a1Q61245 Gm43073-201ENSMUST00000198200 1189 ntBASIC19.67■□□□□ 0.74
Col11a1Q61245 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Col11a1Q61245 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Notumos-201ENSMUST00000151998 2659 ntBASIC19.67■□□□□ 0.74
Col11a1Q61245 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col11a1Q61245 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.67■□□□□ 0.74
Col11a1Q61245 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.67■□□□□ 0.74
Col11a1Q61245 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col11a1Q61245 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.66■□□□□ 0.74
Col11a1Q61245 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Col11a1Q61245 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.66■□□□□ 0.74
Col11a1Q61245 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC19.66■□□□□ 0.74
Col11a1Q61245 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col11a1Q61245 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col11a1Q61245 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Gm7935-201ENSMUST00000100555 1278 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Mir8112-201ENSMUST00000184382 131 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC19.65■□□□□ 0.74
Col11a1Q61245 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 AC138767.1-201ENSMUST00000222661 415 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 Rps4l-201ENSMUST00000071745 943 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC19.65■□□□□ 0.74
Col11a1Q61245 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col11a1Q61245 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC19.65■□□□□ 0.74
Col11a1Q61245 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.65■□□□□ 0.74
Col11a1Q61245 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.64■□□□□ 0.74
Col11a1Q61245 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col11a1Q61245 Gm12644-201ENSMUST00000119935 606 ntBASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms