Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.27■□□□□ 0.68
CtcfQ61164 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.27■□□□□ 0.68
CtcfQ61164 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CtcfQ61164 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CtcfQ61164 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CtcfQ61164 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CtcfQ61164 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CtcfQ61164 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CtcfQ61164 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CtcfQ61164 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.26■□□□□ 0.67
CtcfQ61164 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.26■□□□□ 0.67
CtcfQ61164 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CtcfQ61164 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CtcfQ61164 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CtcfQ61164 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CtcfQ61164 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
CtcfQ61164 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CtcfQ61164 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CtcfQ61164 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.25■□□□□ 0.67
CtcfQ61164 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Gm13148-201ENSMUST00000118892 745 ntBASIC19.25■□□□□ 0.67
CtcfQ61164 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CtcfQ61164 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.25■□□□□ 0.67
CtcfQ61164 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CtcfQ61164 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CtcfQ61164 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CtcfQ61164 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CtcfQ61164 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CtcfQ61164 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CtcfQ61164 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.24■□□□□ 0.67
CtcfQ61164 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CtcfQ61164 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CtcfQ61164 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.24■□□□□ 0.67
CtcfQ61164 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.23■□□□□ 0.67
CtcfQ61164 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CtcfQ61164 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.23■□□□□ 0.67
CtcfQ61164 Gm6211-202ENSMUST00000167849 925 ntBASIC19.23■□□□□ 0.67
CtcfQ61164 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CtcfQ61164 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CtcfQ61164 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.23■□□□□ 0.67
CtcfQ61164 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CtcfQ61164 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms