Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ubr3Q5U430 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ubr3Q5U430 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC21.37■■□□□ 1.01
Ubr3Q5U430 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC21.36■■□□□ 1.01
Ubr3Q5U430 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC21.36■■□□□ 1.01
Ubr3Q5U430 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.36■■□□□ 1.01
Ubr3Q5U430 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Ubr3Q5U430 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ubr3Q5U430 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Gm19721-201ENSMUST00000195284 1764 ntBASIC21.34■■□□□ 1.01
Ubr3Q5U430 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC21.34■■□□□ 1.01
Ubr3Q5U430 AC132104.2-201ENSMUST00000215011 266 ntBASIC21.34■■□□□ 1.01
Ubr3Q5U430 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ubr3Q5U430 Gm11452-201ENSMUST00000122376 690 ntBASIC21.33■■□□□ 1.01
Ubr3Q5U430 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Gm2651-201ENSMUST00000203560 838 ntBASIC21.33■■□□□ 1.01
Ubr3Q5U430 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ubr3Q5U430 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubr3Q5U430 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubr3Q5U430 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubr3Q5U430 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.33■■□□□ 1
Ubr3Q5U430 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ubr3Q5U430 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC21.33■■□□□ 1
Ubr3Q5U430 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC21.32■■□□□ 1
Ubr3Q5U430 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC21.32■■□□□ 1
Ubr3Q5U430 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Gm18206-201ENSMUST00000207027 926 ntBASIC21.32■■□□□ 1
Ubr3Q5U430 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.32■■□□□ 1
Ubr3Q5U430 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
Ubr3Q5U430 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC21.31■■□□□ 1
Ubr3Q5U430 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC21.31■■□□□ 1
Ubr3Q5U430 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ubr3Q5U430 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Ubr3Q5U430 Idnk-204ENSMUST00000226010 1898 ntBASIC21.31■■□□□ 1
Ubr3Q5U430 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Ubr3Q5U430 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC21.3■■□□□ 1
Ubr3Q5U430 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC21.3■■□□□ 1
Ubr3Q5U430 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC21.3■■□□□ 1
Ubr3Q5U430 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ubr3Q5U430 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Ubr3Q5U430 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ubr3Q5U430 Gm15372-201ENSMUST00000120729 834 ntBASIC21.3■■□□□ 1
Ubr3Q5U430 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC21.3■■□□□ 1
Ubr3Q5U430 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC21.3■■□□□ 1
Ubr3Q5U430 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ubr3Q5U430 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC21.3■■□□□ 1
Ubr3Q5U430 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Ubr3Q5U430 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC21.29■■□□□ 1
Ubr3Q5U430 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Ubr3Q5U430 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Ubr3Q5U430 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ubr3Q5U430 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ubr3Q5U430 AC161829.1-201ENSMUST00000220298 281 ntBASIC21.29■■□□□ 1
Ubr3Q5U430 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ubr3Q5U430 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ubr3Q5U430 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ubr3Q5U430 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms