Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Usp28Q5I043 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp28Q5I043 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.92■□□□□ 0.78
Usp28Q5I043 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Usp28Q5I043 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Usp28Q5I043 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp28Q5I043 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.91■□□□□ 0.78
Usp28Q5I043 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Gm12933-201ENSMUST00000120203 872 ntBASIC19.9■□□□□ 0.78
Usp28Q5I043 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.9■□□□□ 0.78
Usp28Q5I043 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.9■□□□□ 0.78
Usp28Q5I043 Gm5408-201ENSMUST00000197998 747 ntBASIC19.9■□□□□ 0.78
Usp28Q5I043 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Usp28Q5I043 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp28Q5I043 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp28Q5I043 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Usp28Q5I043 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.89■□□□□ 0.77
Usp28Q5I043 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.89■□□□□ 0.77
Usp28Q5I043 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.89■□□□□ 0.77
Usp28Q5I043 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Usp28Q5I043 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp28Q5I043 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Usp28Q5I043 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
Usp28Q5I043 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Gm4968-201ENSMUST00000071458 858 ntBASIC19.88■□□□□ 0.77
Usp28Q5I043 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Usp28Q5I043 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp28Q5I043 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Dio3-201ENSMUST00000097228 1449 ntBASIC19.87■□□□□ 0.77
Usp28Q5I043 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Usp28Q5I043 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Usp28Q5I043 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp28Q5I043 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.87■□□□□ 0.77
Usp28Q5I043 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms