Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.44■□□□□ 0.54
Upf3aQ3ULJ3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Upf3aQ3ULJ3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Upf3aQ3ULJ3 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Gm11355-201ENSMUST00000121120 306 ntBASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf3aQ3ULJ3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm17808-201ENSMUST00000200859 894 ntBASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.4■□□□□ 0.54
Upf3aQ3ULJ3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Upf3aQ3ULJ3 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Upf3aQ3ULJ3 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.39■□□□□ 0.54
Upf3aQ3ULJ3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Upf3aQ3ULJ3 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms