Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ddb1Q3U1J4 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Ddb1Q3U1J4 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ddb1Q3U1J4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Gm11452-201ENSMUST00000122376 690 ntBASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ddb1Q3U1J4 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddb1Q3U1J4 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 AC154855.1-201ENSMUST00000227353 1458 ntBASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC22.27■■□□□ 1.16
Ddb1Q3U1J4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddb1Q3U1J4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 AC153889.1-201ENSMUST00000219257 330 ntBASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Gm9885-202ENSMUST00000186234 2209 ntBASIC22.25■■□□□ 1.15
Ddb1Q3U1J4 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ddb1Q3U1J4 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC22.24■■□□□ 1.15
Ddb1Q3U1J4 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ddb1Q3U1J4 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ddb1Q3U1J4 Hsf1-204ENSMUST00000226872 2104 ntBASIC22.24■■□□□ 1.15
Ddb1Q3U1J4 BC021767-201ENSMUST00000126387 1716 ntBASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Gm10052-201ENSMUST00000168019 960 ntBASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms