Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.03■□□□□ 0.32
Col28a1Q2UY11 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.03■□□□□ 0.32
Col28a1Q2UY11 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col28a1Q2UY11 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col28a1Q2UY11 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col28a1Q2UY11 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col28a1Q2UY11 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col28a1Q2UY11 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Col28a1Q2UY11 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Gm22240-201ENSMUST00000175225 82 ntBASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col28a1Q2UY11 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Col28a1Q2UY11 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col28a1Q2UY11 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Gm45412-201ENSMUST00000210217 2275 ntBASIC17■□□□□ 0.31
Col28a1Q2UY11 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col28a1Q2UY11 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Gm20760-201ENSMUST00000179197 648 ntBASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.99■□□□□ 0.31
Col28a1Q2UY11 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.99■□□□□ 0.31
Col28a1Q2UY11 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col28a1Q2UY11 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col28a1Q2UY11 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms