Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Col8a1Q00780 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC14.92□□□□□ -0.02
Col8a1Q00780 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col8a1Q00780 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col8a1Q00780 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC14.92□□□□□ -0.02
Col8a1Q00780 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
Col8a1Q00780 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC14.91□□□□□ -0.02
Col8a1Q00780 AW822252-206ENSMUST00000208904 237 ntBASIC14.91□□□□□ -0.02
Col8a1Q00780 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.91□□□□□ -0.02
Col8a1Q00780 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Col8a1Q00780 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Col8a1Q00780 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col8a1Q00780 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Gm7370-201ENSMUST00000219471 767 ntBASIC14.9□□□□□ -0.02
Col8a1Q00780 Gm18115-201ENSMUST00000221209 621 ntBASIC14.9□□□□□ -0.02
Col8a1Q00780 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Spr-ps1-201ENSMUST00000089584 605 ntBASIC14.9□□□□□ -0.02
Col8a1Q00780 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Col8a1Q00780 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col8a1Q00780 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Gm7791-201ENSMUST00000219066 539 ntBASIC14.89□□□□□ -0.03
Col8a1Q00780 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 AC126028.2-201ENSMUST00000228100 1833 ntBASIC14.89□□□□□ -0.03
Col8a1Q00780 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC14.89□□□□□ -0.03
Col8a1Q00780 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col8a1Q00780 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Col8a1Q00780 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Col8a1Q00780 Gm13474-201ENSMUST00000122466 815 ntBASIC14.88□□□□□ -0.03
Col8a1Q00780 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.88□□□□□ -0.03
Col8a1Q00780 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col8a1Q00780 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col8a1Q00780 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC14.88□□□□□ -0.03
Col8a1Q00780 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a1Q00780 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Gm9954-202ENSMUST00000198686 4725 ntBASIC14.87□□□□□ -0.03
Col8a1Q00780 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col8a1Q00780 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a1Q00780 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms