Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx1P48377 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx1P48377 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx1P48377 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Rfx1P48377 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
Rfx1P48377 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx1P48377 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx1P48377 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Rfx1P48377 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx1P48377 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC20.96■□□□□ 0.95
Rfx1P48377 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Rfx1P48377 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
Rfx1P48377 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx1P48377 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Rfx1P48377 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.95■□□□□ 0.94
Rfx1P48377 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx1P48377 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Rfx1P48377 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC20.94■□□□□ 0.94
Rfx1P48377 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx1P48377 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Rfx1P48377 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Rfx1P48377 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Rfx1P48377 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.93■□□□□ 0.94
Rfx1P48377 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.93■□□□□ 0.94
Rfx1P48377 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.93■□□□□ 0.94
Rfx1P48377 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Rfx1P48377 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx1P48377 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Rfx1P48377 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Rfx1P48377 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Rfx1P48377 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.92■□□□□ 0.94
Rfx1P48377 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.92■□□□□ 0.94
Rfx1P48377 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Rfx1P48377 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.92■□□□□ 0.94
Rfx1P48377 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx1P48377 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.91■□□□□ 0.94
Rfx1P48377 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx1P48377 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 139.3 ms