Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm7153-201ENSMUST00000117092 455 ntBASIC16.65■□□□□ 0.26
Cdx2P43241 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
Cdx2P43241 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.65■□□□□ 0.26
Cdx2P43241 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Cdx2P43241 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Cdx2P43241 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Cdx2P43241 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cdx2P43241 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC16.64■□□□□ 0.26
Cdx2P43241 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Cdx2P43241 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC16.64■□□□□ 0.25
Cdx2P43241 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Cdx2P43241 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Cdx2P43241 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Cdx2P43241 Umpk-ps-201ENSMUST00000211897 827 ntBASIC16.64■□□□□ 0.25
Cdx2P43241 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.64■□□□□ 0.25
Cdx2P43241 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.64■□□□□ 0.25
Cdx2P43241 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Cdx2P43241 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Cdx2P43241 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Cdx2P43241 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC16.63■□□□□ 0.25
Cdx2P43241 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Cdx2P43241 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.62■□□□□ 0.25
Cdx2P43241 Gm6623-201ENSMUST00000173570 544 ntBASIC16.62■□□□□ 0.25
Cdx2P43241 Gm18958-201ENSMUST00000174258 762 ntBASIC16.62■□□□□ 0.25
Cdx2P43241 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC16.62■□□□□ 0.25
Cdx2P43241 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cdx2P43241 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Cdx2P43241 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Cdx2P43241 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Cdx2P43241 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.61■□□□□ 0.25
Cdx2P43241 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Cdx2P43241 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Mir3081-201ENSMUST00000175305 84 ntBASIC16.61■□□□□ 0.25
Cdx2P43241 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.61■□□□□ 0.25
Cdx2P43241 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Cdx2P43241 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Golph3-205ENSMUST00000228671 2842 ntBASIC16.61■□□□□ 0.25
Cdx2P43241 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Cdx2P43241 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Cdx2P43241 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms