Protein–RNA interactions for Protein: P15975

Usp53, Inactive ubiquitin carboxyl-terminal hydrolase 53, mousemouse

Predictions only

Length 1,069 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp53P15975 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp53P15975 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Usp53P15975 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.32■□□□□ 0.84
Usp53P15975 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp53P15975 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.31■□□□□ 0.84
Usp53P15975 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.31■□□□□ 0.84
Usp53P15975 Gm7977-201ENSMUST00000193787 748 ntBASIC20.31■□□□□ 0.84
Usp53P15975 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.31■□□□□ 0.84
Usp53P15975 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp53P15975 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp53P15975 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp53P15975 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp53P15975 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp53P15975 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.3■□□□□ 0.84
Usp53P15975 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp53P15975 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Usp53P15975 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp53P15975 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Usp53P15975 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp53P15975 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp53P15975 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.3■□□□□ 0.84
Usp53P15975 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp53P15975 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Usp53P15975 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Usp53P15975 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.29■□□□□ 0.84
Usp53P15975 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Gm4217-201ENSMUST00000182243 1002 ntBASIC20.29■□□□□ 0.84
Usp53P15975 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.29■□□□□ 0.84
Usp53P15975 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp53P15975 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.29■□□□□ 0.84
Usp53P15975 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.29■□□□□ 0.84
Usp53P15975 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Usp53P15975 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp53P15975 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Gm7638-201ENSMUST00000121348 967 ntBASIC20.28■□□□□ 0.84
Usp53P15975 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.28■□□□□ 0.84
Usp53P15975 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp53P15975 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Usp53P15975 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.27■□□□□ 0.84
Usp53P15975 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.27■□□□□ 0.84
Usp53P15975 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC20.27■□□□□ 0.84
Usp53P15975 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC20.27■□□□□ 0.84
Usp53P15975 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp53P15975 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp53P15975 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp53P15975 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp53P15975 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Usp53P15975 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp53P15975 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp53P15975 Gm27463-201ENSMUST00000183569 57 ntBASIC20.26■□□□□ 0.83
Usp53P15975 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp53P15975 AC159205.6-201ENSMUST00000224935 887 ntBASIC20.26■□□□□ 0.83
Usp53P15975 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp53P15975 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.26■□□□□ 0.83
Usp53P15975 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp53P15975 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Usp53P15975 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp53P15975 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Usp53P15975 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp53P15975 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.25■□□□□ 0.83
Usp53P15975 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.25■□□□□ 0.83
Usp53P15975 Gm7791-201ENSMUST00000219066 539 ntBASIC20.25■□□□□ 0.83
Usp53P15975 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Usp53P15975 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp53P15975 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Usp53P15975 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp53P15975 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp53P15975 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp53P15975 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp53P15975 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms