Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RaraP11416 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RaraP11416 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RaraP11416 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
RaraP11416 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RaraP11416 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
RaraP11416 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RaraP11416 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RaraP11416 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.97■□□□□ 0.63
RaraP11416 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
RaraP11416 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.97■□□□□ 0.63
RaraP11416 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RaraP11416 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RaraP11416 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RaraP11416 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RaraP11416 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
RaraP11416 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
RaraP11416 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.95■□□□□ 0.62
RaraP11416 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
RaraP11416 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RaraP11416 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RaraP11416 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.94■□□□□ 0.62
RaraP11416 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.94■□□□□ 0.62
RaraP11416 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Gm13401-201ENSMUST00000117074 291 ntBASIC18.94■□□□□ 0.62
RaraP11416 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.94■□□□□ 0.62
RaraP11416 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.94■□□□□ 0.62
RaraP11416 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.94■□□□□ 0.62
RaraP11416 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RaraP11416 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RaraP11416 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
RaraP11416 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RaraP11416 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.94■□□□□ 0.62
RaraP11416 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.93■□□□□ 0.62
RaraP11416 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RaraP11416 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.93■□□□□ 0.62
RaraP11416 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.93■□□□□ 0.62
RaraP11416 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RaraP11416 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RaraP11416 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RaraP11416 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.92■□□□□ 0.62
RaraP11416 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms