Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm12890-201ENSMUST00000120885 373 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm11363-201ENSMUST00000121672 548 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm15521-201ENSMUST00000141752 835 ntTSL 2 BASIC6.25□□□□□ -1.41
RaraP11416 Gm25335-201ENSMUST00000158043 103 ntBASIC6.25□□□□□ -1.41
RaraP11416 Bhlhe40-202ENSMUST00000163617 476 ntTSL 2 BASIC6.25□□□□□ -1.41
RaraP11416 Gm10662-201ENSMUST00000168053 942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
RaraP11416 Gm6882-201ENSMUST00000177741 942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
RaraP11416 Rps12-ps21-201ENSMUST00000178172 402 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm5891-201ENSMUST00000179493 942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
RaraP11416 Gm26923-201ENSMUST00000182615 996 ntBASIC6.25□□□□□ -1.41
RaraP11416 Eif4a2-224ENSMUST00000187168 1238 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Gm28783-201ENSMUST00000188872 359 ntTSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 1700113H08Rik-203ENSMUST00000189775 798 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Gm29341-201ENSMUST00000190179 370 ntTSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 Trbv12-3-201ENSMUST00000192675 372 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm43617-201ENSMUST00000196418 606 ntTSL 2 BASIC6.25□□□□□ -1.41
RaraP11416 Gm43150-201ENSMUST00000200931 636 ntTSL 3 BASIC6.25□□□□□ -1.41
RaraP11416 Lair1-209ENSMUST00000205296 412 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Gm2926-201ENSMUST00000205625 239 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm45157-201ENSMUST00000208729 401 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm45530-201ENSMUST00000211658 225 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm45742-201ENSMUST00000212400 433 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm31432-201ENSMUST00000214727 538 ntTSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 AC122317.1-201ENSMUST00000218404 708 ntTSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 AC100590.3-201ENSMUST00000219355 332 ntTSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 4921501I09Rik-201ENSMUST00000220337 384 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 AC165092.4-201ENSMUST00000225025 679 ntBASIC6.25□□□□□ -1.41
RaraP11416 AC160120.1-201ENSMUST00000227446 663 ntBASIC6.25□□□□□ -1.41
RaraP11416 Muc16-201ENSMUST00000034653 1035 ntTSL 2 BASIC6.25□□□□□ -1.41
RaraP11416 Vmn1r211-201ENSMUST00000073728 985 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
RaraP11416 Olfr1193-201ENSMUST00000081697 957 ntBASIC6.25□□□□□ -1.41
RaraP11416 Gm23737-201ENSMUST00000082547 159 ntBASIC6.25□□□□□ -1.41
RaraP11416 Trim6-201ENSMUST00000098180 3827 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Gm4011-201ENSMUST00000174657 2555 ntBASIC6.25□□□□□ -1.41
RaraP11416 Tmprss11a-201ENSMUST00000101073 2657 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Iqcb1-202ENSMUST00000114819 2797 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Stxbp5-201ENSMUST00000038213 8825 ntAPPRIS ALT1 TSL 5 BASIC6.25□□□□□ -1.41
RaraP11416 Pot1a-201ENSMUST00000115327 2447 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 AC107645.1-201ENSMUST00000228660 1810 ntBASIC6.25□□□□□ -1.41
RaraP11416 Zfp280d-201ENSMUST00000098576 4387 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
RaraP11416 Gm5653-201ENSMUST00000223393 1337 ntBASIC6.25□□□□□ -1.41
RaraP11416 Lrrtm4-203ENSMUST00000126399 3050 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
RaraP11416 Zfp27-204ENSMUST00000161904 3090 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Zzz3-204ENSMUST00000106103 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Zfp455-201ENSMUST00000117110 2556 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Gm35066-201ENSMUST00000198898 2074 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Cavin4-201ENSMUST00000030033 2054 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Il1rapl2-201ENSMUST00000075471 2061 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
RaraP11416 Vmn1r35-202ENSMUST00000227346 1854 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm3115-201ENSMUST00000166928 1797 ntAPPRIS P5 TSL 5 BASIC6.24□□□□□ -1.41
RaraP11416 Gm18180-201ENSMUST00000187562 1484 ntBASIC6.24□□□□□ -1.41
RaraP11416 Olfr994-204ENSMUST00000217218 1460 ntAPPRIS P1 TSL 3 BASIC6.24□□□□□ -1.41
RaraP11416 Igkv1-99-201ENSMUST00000103326 359 ntAPPRIS ALT2 BASIC6.24□□□□□ -1.41
RaraP11416 Gm3033-201ENSMUST00000112792 438 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
RaraP11416 Gm12935-201ENSMUST00000119352 246 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm14605-201ENSMUST00000120599 268 ntBASIC6.24□□□□□ -1.41
RaraP11416 Clec2f-201ENSMUST00000121051 374 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm11679-201ENSMUST00000121830 779 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm12488-201ENSMUST00000122449 499 ntBASIC6.24□□□□□ -1.41
RaraP11416 4930555B12Rik-201ENSMUST00000135444 283 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Gm12898-201ENSMUST00000144407 642 ntTSL 3 BASIC6.24□□□□□ -1.41
RaraP11416 1700123O12Rik-204ENSMUST00000146783 577 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Gm26106-201ENSMUST00000157254 228 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm22675-201ENSMUST00000158430 104 ntBASIC6.24□□□□□ -1.41
RaraP11416 Vmn1r77-201ENSMUST00000164446 921 ntAPPRIS P2 BASIC6.24□□□□□ -1.41
RaraP11416 Mir5112-201ENSMUST00000174897 60 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm22650-201ENSMUST00000175138 105 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm24155-201ENSMUST00000175259 110 ntBASIC6.24□□□□□ -1.41
RaraP11416 Vmn2r-ps3-201ENSMUST00000176077 1101 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm26863-201ENSMUST00000181144 624 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
RaraP11416 Mir7046-201ENSMUST00000183435 66 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm28974-201ENSMUST00000187893 231 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm43510-201ENSMUST00000197922 353 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm5110-201ENSMUST00000203122 1063 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm44060-201ENSMUST00000204440 410 ntBASIC6.24□□□□□ -1.41
RaraP11416 Gm32772-201ENSMUST00000205898 594 ntTSL 3 BASIC6.24□□□□□ -1.41
RaraP11416 Gm5735-201ENSMUST00000207053 167 ntBASIC6.24□□□□□ -1.41
RaraP11416 Olfr546-ps1-201ENSMUST00000210328 326 ntBASIC6.24□□□□□ -1.41
RaraP11416 AL669916.3-201ENSMUST00000213855 94 ntBASIC6.24□□□□□ -1.41
RaraP11416 AL669916.6-201ENSMUST00000214610 94 ntBASIC6.24□□□□□ -1.41
RaraP11416 AL669916.4-201ENSMUST00000215976 94 ntBASIC6.24□□□□□ -1.41
RaraP11416 AL669916.1-201ENSMUST00000217640 94 ntBASIC6.24□□□□□ -1.41
RaraP11416 AC153870.1-201ENSMUST00000219599 560 ntBASIC6.24□□□□□ -1.41
RaraP11416 CT030184.2-201ENSMUST00000223064 263 ntBASIC6.24□□□□□ -1.41
RaraP11416 AC161758.1-201ENSMUST00000226123 310 ntBASIC6.24□□□□□ -1.41
RaraP11416 AC115878.1-201ENSMUST00000227247 334 ntBASIC6.24□□□□□ -1.41
RaraP11416 Olfr726-201ENSMUST00000072370 966 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
RaraP11416 Gm25515-201ENSMUST00000083858 157 ntBASIC6.24□□□□□ -1.41
RaraP11416 AL591843.1-201ENSMUST00000223686 3082 ntBASIC6.24□□□□□ -1.41
RaraP11416 Vmn2r121-201ENSMUST00000094491 3062 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
RaraP11416 Gm1966-201ENSMUST00000184540 7293 ntBASIC6.24□□□□□ -1.41
RaraP11416 Sspn-202ENSMUST00000111701 4512 ntTSL 3 BASIC6.24□□□□□ -1.41
RaraP11416 Ckap5-203ENSMUST00000111337 6384 ntTSL 5 BASIC6.23□□□□□ -1.41
RaraP11416 Tgtp2-201ENSMUST00000046745 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
RaraP11416 Gm21985-201ENSMUST00000141047 4532 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
RaraP11416 Gm10319-201ENSMUST00000078431 1355 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
RaraP11416 Trhr-202ENSMUST00000110289 1745 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
RaraP11416 Trav8n-2-201ENSMUST00000103632 408 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RaraP11416 Rnf148-201ENSMUST00000104979 1239 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
RaraP11416 Gm14128-201ENSMUST00000119514 1011 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms