Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm20877-202ENSMUST00000191358 1222 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm37050-201ENSMUST00000193464 466 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm38053-201ENSMUST00000193938 160 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm37095-201ENSMUST00000195421 205 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm43276-201ENSMUST00000199712 364 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Klrb1b-204ENSMUST00000205130 917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm45200-201ENSMUST00000207434 919 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Gm44733-201ENSMUST00000208067 543 ntTSL 3 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 AC156639.1-201ENSMUST00000216503 660 ntTSL 3 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 AC153382.1-201ENSMUST00000217953 1007 ntTSL 5 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 AC122448.1-201ENSMUST00000226317 772 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 AC106830.1-201ENSMUST00000228032 1003 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 Hypm-201ENSMUST00000044987 581 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Vmn1r236-201ENSMUST00000066998 1121 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Olfr480-201ENSMUST00000071658 1029 ntBASIC3.79□□□□□ -1.8
Nkx3-1P97436 F9-201ENSMUST00000033477 2734 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Fat3-205ENSMUST00000217308 18760 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Macc1-205ENSMUST00000222784 4710 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 1700017N19Rik-203ENSMUST00000187119 1524 ntTSL 5 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Vmn1r47-203ENSMUST00000227811 6792 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Lrp1b-201ENSMUST00000052550 16294 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Nkx3-1P97436 Speer5-ps1-201ENSMUST00000169525 1430 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1140-201ENSMUST00000214723 1421 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr310-202ENSMUST00000217724 1400 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr788-202ENSMUST00000213222 4747 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn1r5-203ENSMUST00000228276 3188 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm37625-201ENSMUST00000194969 4872 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Elavl4-204ENSMUST00000106598 3997 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Hbp1-204ENSMUST00000175686 1315 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Cul4b-203ENSMUST00000115118 3344 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1263-204ENSMUST00000217065 4186 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 AC158605.2-201ENSMUST00000220287 2726 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn2r-ps45-201ENSMUST00000174138 2435 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Scel-201ENSMUST00000095576 2424 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm8660-201ENSMUST00000105187 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm4177-201ENSMUST00000105196 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm5728-201ENSMUST00000105209 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Znrd1-201ENSMUST00000113669 742 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm14916-201ENSMUST00000121904 204 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm13905-201ENSMUST00000140009 579 ntTSL 3 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm23228-201ENSMUST00000157296 270 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn1r94-201ENSMUST00000164526 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm4216-201ENSMUST00000168926 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn1r142-201ENSMUST00000169697 918 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn1r-ps45-201ENSMUST00000174106 955 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm20389-201ENSMUST00000174217 1006 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm5473-201ENSMUST00000179326 642 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm27760-201ENSMUST00000185048 114 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm28364-201ENSMUST00000187908 334 ntTSL 3 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Nabp1-207ENSMUST00000188204 972 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm44376-201ENSMUST00000197570 128 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm45507-201ENSMUST00000210611 519 ntTSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 5430402P08Rik-201ENSMUST00000211799 1143 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 AC156803.1-201ENSMUST00000224407 820 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 AC159231.1-201ENSMUST00000225365 226 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 AC154576.1-201ENSMUST00000225864 563 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 AC131747.1-201ENSMUST00000226159 793 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Il2-201ENSMUST00000029275 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Kcnj1-201ENSMUST00000047334 2987 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm10042-201ENSMUST00000079884 78 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1109-201ENSMUST00000099863 939 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Ktn1-226ENSMUST00000191511 3962 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1197-202ENSMUST00000213118 2899 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr536-205ENSMUST00000215768 4231 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn2r77-201ENSMUST00000164996 2565 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1507-203ENSMUST00000206062 2803 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm38235-201ENSMUST00000194600 4952 ntBASIC3.78□□□□□ -1.8
Nkx3-1P97436 Dnah7a-201ENSMUST00000094964 12245 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Plch1-209ENSMUST00000161052 1472 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Zfp788-201ENSMUST00000045720 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Vmn1r185-212ENSMUST00000228633 5385 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Olfr1317-204ENSMUST00000216988 2488 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Nkx3-1P97436 Gm42876-201ENSMUST00000196989 3215 ntBASIC3.78□□□□□ -1.81
Nkx3-1P97436 Usp9x-201ENSMUST00000089302 11887 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
Nkx3-1P97436 Gm14308-201ENSMUST00000108990 1628 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Olfr1223-201ENSMUST00000217342 2333 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Olfr1480-202ENSMUST00000207093 1819 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Olfr1480-204ENSMUST00000207987 1804 ntTSL 3 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Cd84-205ENSMUST00000155802 3291 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Clvs1-201ENSMUST00000038841 3604 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Igkv12-98-201ENSMUST00000103327 344 ntAPPRIS ALT2 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm15267-201ENSMUST00000120888 464 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm16222-201ENSMUST00000124320 1298 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm23496-201ENSMUST00000157741 248 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm25224-201ENSMUST00000158195 68 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm24636-201ENSMUST00000158673 288 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Snrpe-203ENSMUST00000166291 360 ntTSL 3 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm28709-201ENSMUST00000186967 456 ntTSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm29133-201ENSMUST00000189155 885 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm28612-201ENSMUST00000189214 416 ntTSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm29097-201ENSMUST00000190273 422 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm36971-201ENSMUST00000195244 378 ntTSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm37505-201ENSMUST00000195670 461 ntTSL 5 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm43655-201ENSMUST00000197367 222 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm43001-202ENSMUST00000199076 192 ntTSL 3 BASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm43925-201ENSMUST00000203498 206 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm17811-201ENSMUST00000206193 387 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm4501-201ENSMUST00000207330 551 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm4558-201ENSMUST00000207886 521 ntBASIC3.77□□□□□ -1.81
Nkx3-1P97436 Gm3213-201ENSMUST00000219296 441 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 76,532 protein–RNA pairs in 126.1 ms