Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn11aQ9R053 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn11aQ9R053 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Gm22697-201ENSMUST00000175194 63 ntBASIC20.92■□□□□ 0.94
Scn11aQ9R053 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.92■□□□□ 0.94
Scn11aQ9R053 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Scn11aQ9R053 AC120002.2-201ENSMUST00000220205 773 ntBASIC20.92■□□□□ 0.94
Scn11aQ9R053 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn11aQ9R053 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Gm13474-201ENSMUST00000122466 815 ntBASIC20.91■□□□□ 0.94
Scn11aQ9R053 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.91■□□□□ 0.94
Scn11aQ9R053 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Gm10566-201ENSMUST00000086739 996 ntBASIC20.91■□□□□ 0.94
Scn11aQ9R053 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.91■□□□□ 0.94
Scn11aQ9R053 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Scn11aQ9R053 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scn11aQ9R053 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn11aQ9R053 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn11aQ9R053 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Scn11aQ9R053 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn11aQ9R053 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Scn11aQ9R053 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn11aQ9R053 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Scn11aQ9R053 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn11aQ9R053 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn11aQ9R053 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn11aQ9R053 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.88■□□□□ 0.93
Scn11aQ9R053 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn11aQ9R053 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn11aQ9R053 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn11aQ9R053 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Scn11aQ9R053 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Gm17807-201ENSMUST00000186869 298 ntBASIC20.87■□□□□ 0.93
Scn11aQ9R053 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn11aQ9R053 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms