Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cpsf3Q9QXK7 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Gm37055-201ENSMUST00000191866 133 ntBASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Gm21814-202ENSMUST00000203277 873 ntBASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Gm4974-201ENSMUST00000209974 875 ntBASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cpsf3Q9QXK7 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cpsf3Q9QXK7 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Cpsf3Q9QXK7 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Mir6982-201ENSMUST00000184354 68 ntBASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Timm23-208ENSMUST00000226683 750 ntBASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Odf3b-204ENSMUST00000227834 930 ntBASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Grk6-206ENSMUST00000224995 2971 ntBASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cpsf3Q9QXK7 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cpsf3Q9QXK7 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cpsf3Q9QXK7 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Cpsf3Q9QXK7 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms