Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.27■□□□□ 0.68
Copb1Q9JIF7 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
Copb1Q9JIF7 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Copb1Q9JIF7 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Copb1Q9JIF7 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
Copb1Q9JIF7 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.26■□□□□ 0.67
Copb1Q9JIF7 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.26■□□□□ 0.67
Copb1Q9JIF7 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Copb1Q9JIF7 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Gm42569-201ENSMUST00000200539 472 ntBASIC19.25■□□□□ 0.67
Copb1Q9JIF7 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Copb1Q9JIF7 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Gm13148-201ENSMUST00000118892 745 ntBASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Copb1Q9JIF7 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Gm8495-201ENSMUST00000188740 694 ntBASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Gm26524-201ENSMUST00000192339 390 ntBASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Copb1Q9JIF7 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Copb1Q9JIF7 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms