Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lima1Q9ERG0 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.38■□□□□ 0.37
Lima1Q9ERG0 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lima1Q9ERG0 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lima1Q9ERG0 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.35■□□□□ 0.37
Lima1Q9ERG0 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Gm42569-201ENSMUST00000200539 472 ntBASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Idnk-204ENSMUST00000226010 1898 ntBASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lima1Q9ERG0 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lima1Q9ERG0 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Lima1Q9ERG0 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 AC160393.1-201ENSMUST00000218378 1279 ntBASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lima1Q9ERG0 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms