Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Upf1Q9EPU0 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upf1Q9EPU0 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Upf1Q9EPU0 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Upf1Q9EPU0 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.05■□□□□ 0.8
Upf1Q9EPU0 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Ndufaf2-202ENSMUST00000223734 556 ntBASIC20.04■□□□□ 0.8
Upf1Q9EPU0 AC154222.1-201ENSMUST00000223882 475 ntBASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Upf1Q9EPU0 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Gm9727-201ENSMUST00000161387 555 ntBASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Gm45683-201ENSMUST00000210825 1247 ntBASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Upf1Q9EPU0 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Gm44872-201ENSMUST00000207864 420 ntBASIC20.02■□□□□ 0.8
Upf1Q9EPU0 AC159114.1-201ENSMUST00000220349 266 ntBASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Upf1Q9EPU0 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Upf1Q9EPU0 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC20.02■□□□□ 0.79
Upf1Q9EPU0 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Gm15165-201ENSMUST00000118140 502 ntBASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Upf1Q9EPU0 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms