Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Cdc40Q9DC48 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Gm715-201ENSMUST00000117865 831 ntBASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdc40Q9DC48 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Gm44832-201ENSMUST00000208849 2303 ntBASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdc40Q9DC48 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Fst-202ENSMUST00000223640 2612 ntBASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdc40Q9DC48 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Mtag2-201ENSMUST00000058665 714 ntBASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdc40Q9DC48 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdc40Q9DC48 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms