Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim8Q99PJ2 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim8Q99PJ2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim8Q99PJ2 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Gm26571-201ENSMUST00000181399 666 ntBASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim8Q99PJ2 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Gm42569-201ENSMUST00000200539 472 ntBASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim8Q99PJ2 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Trim8Q99PJ2 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim8Q99PJ2 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim8Q99PJ2 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Gm7514-201ENSMUST00000209475 934 ntBASIC17.19■□□□□ 0.34
Trim8Q99PJ2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim8Q99PJ2 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.18■□□□□ 0.34
Trim8Q99PJ2 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms