Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Msh4Q99MT2 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Gm11927-201ENSMUST00000118472 759 ntBASIC17.11■□□□□ 0.33
Msh4Q99MT2 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.11■□□□□ 0.33
Msh4Q99MT2 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Msh4Q99MT2 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Gm5643-201ENSMUST00000117081 966 ntBASIC17.1■□□□□ 0.33
Msh4Q99MT2 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.1■□□□□ 0.33
Msh4Q99MT2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Msh4Q99MT2 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Msh4Q99MT2 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Gm18666-201ENSMUST00000190039 958 ntBASIC17.08■□□□□ 0.32
Msh4Q99MT2 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.08■□□□□ 0.32
Msh4Q99MT2 Gm10812-201ENSMUST00000099864 546 ntBASIC17.08■□□□□ 0.32
Msh4Q99MT2 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Msh4Q99MT2 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.07■□□□□ 0.32
Msh4Q99MT2 Gm13158-201ENSMUST00000122007 736 ntBASIC17.07■□□□□ 0.32
Msh4Q99MT2 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Zfp783-201ENSMUST00000095946 670 ntBASIC17.07■□□□□ 0.32
Msh4Q99MT2 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Msh4Q99MT2 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms