Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp7Q8R1T1 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp7Q8R1T1 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp7Q8R1T1 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp7Q8R1T1 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Chmp7Q8R1T1 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Gm27389-201ENSMUST00000183622 195 ntBASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC22.53■■□□□ 1.2
Chmp7Q8R1T1 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Gm37374-201ENSMUST00000194954 1829 ntBASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Gm21559-201ENSMUST00000220638 855 ntBASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Il3ra-202ENSMUST00000223589 738 ntBASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Gm8587-201ENSMUST00000076538 843 ntBASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Chmp7Q8R1T1 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Spsb2-203ENSMUST00000112473 1322 ntBASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Chmp7Q8R1T1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Mir1668-201ENSMUST00000184114 107 ntBASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Gm6627-201ENSMUST00000218299 2386 ntBASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Golph3-205ENSMUST00000228671 2842 ntBASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Chmp7Q8R1T1 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC22.49■■□□□ 1.19
Chmp7Q8R1T1 Gm8258-201ENSMUST00000055593 1449 ntBASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 AC120002.2-201ENSMUST00000220205 773 ntBASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Chmp7Q8R1T1 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC22.47■■□□□ 1.19
Chmp7Q8R1T1 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms